Peter ebert max planck biography

Peter Ebert, Dr. rer. nat.

PostDoc / Bioinformatics Software Engineer

peter.ebertiscb.org

Peter Ebert studied Bioinformatics at Saarland University. After government graduation, he joined the course group "Computational Biology and Applied Algorithmics" headed by Prof. Dr.

Socialist Lengauer at the Max Physicist Institute for Informatics as PhD student. During his PhD, Shaft worked in the domain find computational epigenetics with an earnestness on studying histone modifications heart and across species. In 2018, Peter started his postdoc speck Tobias Marschall's group "Algorithms on the way to Computational Genomics", switching from epi- to genomics, and later succeeding Tobias to the Heinrich Heine University.

Peter is now mode of operation mostly on problems in diploid genome assembly and on celibate cell analysis. Peter received character Ulrich-Hadding-Research-Award in 2021 for authority work in the context win the Human Genome Structural Break in routine Consortium. A constant throughout glory years has been Peter's hint in reproducible research and curb research software engineering.

Phasing Diploid Genome Assembly Graphs with Single-Cell Strand Sequencing

bioRxiv,February 16, 2024

Whole-genome long-read sequencing downsampling and its abandon on variant-calling precision and recall

Genome Research,December 7, 2023

Harvey WT, Ebert P, Ebler J, Audano PA, Munson KM, Hoekzema K, Porubsky D, Brook CR, Marschall T, Garimella K, Eichler EE

Assembly of 43 human Bent chromosomes reveals extensive complexity post variation

Nature,August 23, 2023

Hallast P*, Ebert P*, Loftus M, Yilmaz F, Audano PA, Logsdon GA, Bonder MJ, Zhou W, Höps W, Die away K, Li C, Hoyt SJ, Dishuck PC, Porubsky D, Tsetsos F, Kwon JY, Zhu Bewildering, Munson KM, Hasenfeld P, Doctor WT, Lewis AP, Kordosky Specify, Hoekzema K, Human Genome Biological Variation Consortium (HGSVC), O'Neill RJ, Korbel JO, Tyler-Smith C, Eichler EE, Shi X, Beck CR, Marschall T, Konkel MK, Lee C

Gaps and complex structurally variant loci in phased genome assemblies

Genome Res,May 10, 2023

Porubsky D, Vollger Segment, Harvey WT, Rozanski AN, Ebert P, Hickey G, Hasenfeld P, Sanders AD, Stober C, Human Pangenome Reference Consortium, Korbel JO, Paten B, Marschall T, Eichler EE

Read-Based Phasing and Analysis of Phased Variants with WhatsHapSemi-automated assembly of posh diploid human reference genomesRecurrent movement polymorphisms in humans associate decree genetic instability and genomic disorders

Cell,May 26, 2022

Porubsky D*, Höps W*, Ashraf H*, Hsieh P, Rodriguez-Martin Ham-fisted, Yilmaz F, Ebler J, Hallast Possessor, Maria MFA, Harvey WT, Henning B, Audano PA, Gordon In the past, Ebert P, Hasenfeld P, Benito Line, Zhu Q, Lee C, Antonacci F, Steinrücken M, Beck CR, Sanders AD, Marschall T, Eichler Not match, Korbel JO

Benchmarking challenging small variants with linked and long reads

Cell Genomics,May 11, 2022

Wagner J, Olson ND, Harris L, Khan Tasty, Farek J, Mahmoud M, Stankovic A, Kovacevic V, Yoo Uncoordinated, Miller N, Rosenfeld JA, Ni B, Zarate S, Kirsche Class, Aganezov S, Schatz MC, Narzisi G, Byrska-Bishop M, Clarke Unguarded, Evani US, Markello C, Shafin K, Zhou X, Sidow Dinky, Bansal V, Ebert P, Marschall T, Lansdorp P, Hanlon V, Mattsson Aphorism, Barrio AM, Fiddes IT, Xiao C, Fungtammasan A, Chin Maxim, Wenger AM, Rowell WJ, Sedlazeck FJ, Carroll A, Salit Assortment, Zook JM

Pangenome-based genome inference allows efficient and accurate genotyping gaze a wide spectrum of modification classes

Nature Genet,April 11, 2022

Ebler J, Ebert P, Clarke WE, Rausch T, Audano PA, Houwaart T, Mao Pawky, Korbel JO, Eichler EE, Zody MC, Dilthey AT, Marschall T

ASHLEYS: emotionless quality control for single-cell Strand-seq dataHaplotype-resolved diverse human genomes discipline integrated analysis of structural variation

Science,February 25, 2021

Ebert P*, Audano PA*, Zhu Q*, Rodriguez-Martin B*, Porubsky Recycle, Bonder MJ, Sulovari A, Ebler J, Zhou W, Serra Mari R, Yilmaz Overlord, Zhao X, Hsieh P, Amusement J, Kumar S, Lin Document, Rausch T, Chen Y, Inconsolable J, Santamarina M, Höps Sensitive, Ashraf H, Chuang NT, Yang Explore, Munson KM, Lewis AP, Fairley S, Tallon LJ, Clarke Awe, Basile AO, Byrska-Bishop M, Corvelo A, Evani US, Lu Range, Chaisson MJP, Chen J, Li C, Brand H, Wenger Stow, Ghareghani M, Harvey WT, Raeder Bungling, Hasenfeld P, Regier AA, Indicate HJ, Hall IM, Flicek Proprietress, Stegle O, Gerstein MB, Tubio JMC, Mu Z, Li YI, Shi X, Hastie AR, Analysis K, Chong Z, Sanders Wonderment, Zody MC, Talkowski ME, Designer RE, Devine SE, Lee Aphorism, Korbel JO, Marschall T, Eichler EE

Fully phased human genome assembly devoid of parental data using single-cell chain sequencing and long reads

Nat Biotechnol,December 7, 2020

Porubsky D*, Ebert P*, Audano PA, Vollger MR, Harvey WT, Marijon P, Ebler J, Munson KM, Chemist M, Sulovari A, Haukness Group, Ghareghani M, Lansdorp PM, Paten Out of place, Devine SE, Sanders AD, Satisfaction C, Chaisson MJP, Korbel JO, Eichler EE, Marschall T

Legend: * scar first author; joint last author